Iflavirus seqs
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Virus

Strain

Region

Length

Accession No. Reference Comments
Group A
Infectious flacherie virus (IFV)
  IFV ? CG 9650 AB000906 Isawa et al., 1998 polyprotein contains an NPGP site
  IFV ZheJiang01/CHN CG 9665 EU868609 Lu et al., 2009 China
  IFV Karnataka01/IND pol 1920 EF422866 Lu et al., unpub. India
  IFV India? CG 9665 HM569717 Chen et al., unpub. China/2004
  IFV India? CG 9675 HM245295 Chen et al., unpub. China/2004
 
Group B
Sacbrood virus (SBV)
  SBV Rothamstead CG 8832 AF092924

Ghosh et al., 1999

 
  SBV Chinese SBV VP1 1038 AF251124

Jianxun et al., unpub.

 
CG 8740 AF469603

Zhang et al., unpub.

 
  SBV Sophia1 R80 capsid(p)? 443 AY152712 Ribiere et al., unpub.  
non-structural(p) 732 AY152713 Ribiere et al., unpub.  
  SBV Riez2002 capsid(p)? 443 AY152711 Ribiere et al., unpub.  
non-structural(p) 732 AY152714 Ribiere et al., unpub.  
  SBV Hai Hung (Vietnam) pol(p) 880 AY311387 Le et al., unpub.  
  SBV LN/China/2009 CG 8863 HM237361 Ma et al., unpub.  
  SBV II10/India/2012 polyprotein-cr 8550 JX194121 Rangeshwaran et al., unpub. from Apis cerana
 
Group C
Perina nuda virus (PnV)
  PnV ? CG 9476 AF323747

Wu et al., 2002

polyprotein contains 2 NPGP motifs
Ectropis obliqua virus (EoV)
  EoV ? CG* 8067 AY341824

Wang et al., 2004

polyprotein contains 2 NPGP motifs
* ~1400 nt missing from 5' end of the genome.
 
Group D
Deformed wing virus (DWV)
  DWV Italy CG 10131 AJ489744

Lanzi et al., 2006

polyprotein contains an NPGP motif
  DWV PA CG 10166 AY292384

Lanzi et al., 2006

polyprotein contains an NPGP motif
  DWV Warwick-2009 CG 10167 GU109335 Bouleau Jamois et al., unpub. polyprotein contains an NPGP motif
  DWV Chilensis A1/Chile/2011 CG 10171 JQ413340 Barriga et al., ubpub.  
  DWV DWV_Ox/YK/2010 CG(p) 10115 KC786223 Wang et al., 2013  
  DWV Liaoning-1/China/2017 CG 10167 MF770715 Fei et al., unpub.  
  DWV AUSTRIA-1 various 4596 DQ224278 Berenyi et al., 2007  
  DWV AUSTRIA-2 VP2-VP1 & hel 1426 DQ224279 Berenyi et al., 2007  
  DWV AUSTRIA-3 VP2-VP1 & hel 1426 DQ224280 Berenyi et al., 2007  
  DWV AUSTRIA-4 VP2-VP1 & hel 1426 DQ224281 Berenyi et al., 2007  
  DWV AUSTRIA-5 VP2-VP1 & hel 1426 DQ224282 Berenyi et al., 2007  
  DWV AUSTRIA-6 VP2-VP1 & hel 1426 DQ224283 Berenyi et al., 2007  
  DWV AUSTRIA-7 VP2-VP1 & hel 1426 DQ224284 Berenyi et al., 2007  
  DWV AUSTRIA-8 VP2-VP1 & hel 1426 DQ224285 Berenyi et al., 2007  
  DWV AUSTRIA-9 VP2-VP1 & hel 1426 DQ224286 Berenyi et al., 2007  
  DWV POLAND-1 VP2-VP1 & hel 1426 DQ224287 Berenyi et al., 2007  
  DWV POLAND-2 VP2-VP1 & hel 1426 DQ224288 Berenyi et al., 2007  
  DWV POLAND-3 VP2-VP1 & hel 1426 DQ224289 Berenyi et al., 2007  
  DWV POLAND-4 VP2-VP1 & hel 1426 DQ224290 Berenyi et al., 2007  
  DWV POLAND-5 VP2-VP1 & hel 1426 DQ224291 Berenyi et al., 2007  
  DWV GERMANY-1 VP2-VP1 & hel 1426 DQ224292 Berenyi et al., 2007  
  DWV GERMANY-2 VP2-VP1 & hel 1426 DQ224293 Berenyi et al., 2007  
  DWV GERMANY-3 VP2-VP1 & hel 1426 DQ224294 Berenyi et al., 2007  
  DWV HUNGARY-1 VP2-VP1 & hel 1426 DQ224295 Berenyi et al., 2007  
  DWV HUNGARY-2 VP2-VP1 & hel 1426 DQ224296 Berenyi et al., 2007  
  DWV HUNGARY-3 VP2-VP1 & hel 1426 DQ224297 Berenyi et al., 2007  
  DWV HUNGARY-4 VP2-VP1 & hel 1426 DQ224298 Berenyi et al., 2007  
  DWV HUNGARY-5 VP2-VP1 & hel 1426 DQ224299 Berenyi et al., 2007  
  DWV SLOVENIA-1 VP2-VP1 & hel 1426 DQ224300 Berenyi et al., 2007  
  DWV SLOVENIA-2 VP2-VP1 & hel 1426 DQ224301 Berenyi et al., 2007  
  DWV SLOVENIA-3 VP2-VP1 & hel 1426 DQ224302 Berenyi et al., 2007  
  DWV SLOVENIA-4 VP2-VP1 & hel 1426 DQ224303 Berenyi et al., 2007  
  DWV NEPAL-1 VP2-VP1 & hel 1426 DQ224304 Berenyi et al., 2007  
  DWV NEPAL-2 VP2-VP1 & hel 1426 DQ224305 Berenyi et al., 2007  
  DWV SRI LANKA-1 VP2-VP1 & hel 1426 DQ224306 Berenyi et al., 2007  
  DWV SRI LANKA-2 VP2-VP1 & hel 1426 DQ224307 Berenyi et al., 2007  
  DWV U.A.E.-1 VP2-VP1 & hel 1426 DQ224308 Berenyi et al., 2007  
  DWV U.A.E.-2 VP2-VP1 & hel 1426 DQ224309 Berenyi et al., 2007  
  DWV CANADA-1 VP2-VP1 & hel 1426 DQ224310 Berenyi et al., 2007  
  DWV CANADA-2 VP2-VP1 & hel 1426 DQ224311 Berenyi et al., 2007
               
Varroa destructor virus-1 / Deformed wing virus recombinants (VDV-DWV)
  VDV-DWV VDV-1-DWV-No-5 CG 10149 HM067437 Moore et al., 2011 polyprotein contains an NPGP motif
  VDV-DWV VDV-1-DWV-No-9 CG 10154 HM067438 Moore et al., 2011 polyprotein contains an NPGP motif
  VDV-DWV Zriffin (Israel; Oct-2008) CG 9473 JF440526 Zioni et al., 2011 polyprotein contains an NPGP motif
               
Varroa destructor virus-1 (VDV)
  VDV Wageningen, Netherlands CG 10112 AY251269

Ongus et al., 2004

polyprotein contains an NPGP motif
  VDV Zriffin (Israel; Oct-2008) CG 9974 JF440525 Zioni et al., 2011 polyprotein contains an NPGP motif
  VDV VDV-1_Ox/UK/2010 CG(p) 10089 KC786222 Wang et al., 2013  
               
Kakugo virus  (KV)
  KV ? CG 10152 AB070959

Fujiyuki et al., 2004

polyprotein contains an NPGP motif
  KV KV_Ox/UK/2010 CG(p) 10127 KC786224 Wang et al., 2013  
               
Group E
Venturia canescens picorna-like virus (VcPLV)
  VcPLV VcSRV pol 2103 AY534885

Reineke and Asgari, 2005

 
 
Ungrouped
Brevicoryne brassicae picorna-like virus (BBPLV)
  BBPLV Warwick, UK CG 10180 EF517277 Ryabov, 2007
               
Slow Bee paralysis virus (SBPV)
  SBPV Rothamsted (UK, 1986) CG 9505 EU035616 de Miranda et al., 2010  
  SBPV Harpenden (UK, 1986) CG 9424 GU938761 de Miranda et al., 2010  
 
Not yet grouped
Nasonia vitripennis virus (NvitV)
NvitV-1 Nasonia vitripennis virus 1 pro(p)/pol 2789 FJ790486 Oliveira et al., unpub. most closely related to VcPLV
  NvitV-2 Nasonia vitripennis virus 2 pol(p) 1523 FJ790487 Oliveira et al., unpub. most closely related to sacbrood virus
NvitV-3 Nasonia vitripennis virus 3 various (with gaps) 4970 FJ790488 Oliveira et al., unpub. related to Nora virus (not an iflavirus)
               
Not yet grouped
Nilaparvata lugens honeydew virus 1 (NlHV-1)
  NlHV-1 Izumo (Japan) CG 10967 AB766259 Murakami et al., 2013  
               
Not yet grouped
Nilaparvata lugens honeydew virus 2 (NlHV-2)
  NlHV-2 Izumo (Japan) CG 10985 AB826459 Murakami et al., 2014  
               
Not yet grouped
Nilaparvata lugens honeydew virus 3 (NlHV-3)
  NlHV-3 Kagoshima (Japan) CG 10600 AB826460 Murakami et al., 2014  
               
Not yet grouped
Spodoptera exigua iflavirus 1 (SeIV-1)
  SeIV-1 unnamed CG 10347 JN091707 Millan-Leiva et al., 2012  
               
Not yet grouped
Spodoptera exigua iflavirus 2 (SeIV-2)
  SeIV-2 Korean (South Korea/2010) CG 9501 JN870848 Choi et al., 2012  
  SeIV-2 Spain/2010 CG 9504 KJ186788 Jakubowska et al., unpub.  
               
Not yet grouped
Lygus lineolaris virus 1  (LlV-1)
  LlV-1 Washington County/MS/US/2008 CG 9655 JF720348 Perera et al., 2012  
               
Not yet grouped
Halyomorpha halys virus (HhV)
  HhV Beltsville/MD-USA/2012 CG 9271 KF699344 Sparks et al., 2013  
               
Not yet grouped
Heliconius erato iflavirus (HeIV)
  HeIV HeratoCRSEC/Costa Rica/2011 CG 9910 KJ679438 Smith et al., 2014  
               
Not yet grouped
Helicoverpa armigera iflavirus (HaIV)
  HaIV HBLF2013-1 (China, 2013) CG 10017 KX228231 Yuan et al., unpub.  
               
Not yet grouped
Antheraea pernyi iflavirus (ApIV)
  ApIV LnApIV-02 CG 10176 KF751885 Geng et al., 2014  
               
Not yet grouped
Laodelphax striatellus picorna-like virus 2 (LsPV-2)
  LsPV-2 LsPV2/South Korea/2011 CG 10889 KM272628 Je et al., unpub.  
               
Not yet grouped
Dinocampus coccinellae paralysis virus (DcPV)
  DcPV Quebec2013/CAN/2009 CG 10192 KF843822 Dheilly et al., unpub.  
               
Not yet grouped
Thaumetopoea pityocampa iflavirus 1  (TpIV-1)
  TpIV-1 Turkey/2014 CG 9816 KP217032 Jakubowska et al. unpub.  
               
Not yet grouped
Graminella nigrifrons iflavirus 1 (GnIV-1)
  GnIV-1 Ohio/USA/2014 CG 9617 KP866792 Chen et al., 2015  
               
Not yet grouped
Opsiphanes invirae iflavirus 1 (OiIV-1)
  OiIV-1 Brazilian/2012 CG 9855 KR534892 Silva et al., 2015  
               
Not yet grouped
La Jolla virus (LJV)
  LJV MONMEL09/France/2010 CG 9722 KP714073 Webster et al., 2015  
  LJV MAT03/Ghana/2010 CG 9786 KP714074 Webster et al., 2015  
    plus many more:
KP969709-969712
KP969720-969747
         
               
Not yet grouped
Twyford virus (TwV)
  TwV no details given CG 8416 KP714075 Webster et al., 2015  
               
Not yet grouped
Bombyx mori iflavirus (BmIV)
  BmIV BMI1/Japan/2014 CG 10119 LC068762 Suzuki et al., 2015  
  BmIV BmIV variant 1 (Japan, 2016) CG 10244 LC214356 Matsuoka et al., unpub.  
               
Not yet grouped
Kinkell virus (KV)
  KV Dsus_PoolSeq2 partial 6784 KU754510 Webster et al., 2016  
               
Not yet grouped
Moku virus (MV)
  MV Big Island/Hawaii/USA CG 10056 KU645789 Mordecai et al., 2016  
               
Not yet grouped
King virus (KiV)
  KiV UWV1/USA partial genome 6962 KX779453 Greninger et al., unpub. Yuma myotis
  KiV UWV2/USA/2016 CG 10193 KX779454 Greninger et al., unpub. Yuma myotis
               
Not yet grouped
Diamondback moth iflavirus (DMIV)
  DMIV Guangzhou/China/2016 CG 9580 KY435608 Chen, unpub. Plutella xylostella
               
Not yet grouped
Chequa iflavirus (CIV)
CIV A14-49.4/Australia/2014 CG 9932 KY659604 Sakuna et al., 2017, 2018 Cherax quadricarinatus
               
Not yet grouped
Pityohyphantes rubrofasciatus iflavirus
  PrIV UW1/USA/2016 CG 9834 KX452237 Greninger et al., unpub. Pityohyphantes rubrofasciatus
               
Not yet grouped
Bat iflavirus
  BIV Bat/CAM/IfaV-P17/2013 CG 10519 KX644939 Yinda et al., 2016 Eidolon helvum
               
Not yet grouped
Ixodes holocyclus iflavirus
  IhIV 1/Australia/2000-2002 pp-coding region 8841 KY020412 O'Brien et al., unpub. Ixodes holocyclus
               
CG = complete genome; (p) = partial gene sequence; N/A = not available on the EMBL/GenBank/DDBJ databases

References

Chen, Y., Liu, S. and Bonning, B.C. (2015). Genome sequence of a novel iflavirus from the leafhopper Graminella nigrifrons. Genome Announc. 3(2). pii: e00323-15. doi: 10.1128/genomeA.00323-15.

Choi, J.Y., Kim, Y.-S., Wang, Y., Shin, S.W., Kim, I., Tao, X.Y., Liu, Q., Roh, J.Y., Kim, J.S. and Je, Y.H. (2012). Complete genome sequence of a novel picorna-like virus isolated from Spodoptera exigua. J. Asia Pac. Entomol. 15: 259-263.

de Miranda, J., Dainat, B., Locke, B., Cordoni, G., Berthoud, H., Gauthier, L., Neumann, P., Budge, G.E., Ball, B.V. and Stoltz, D.B. (2010). Genetic characterisation of slow paralysis virus of the honeybee (Apis mellifera L.). J. Gen. Virol., In press.

Fujiyuki, T., Takeuchi, H., Ono, M., Ohka, S., Sasaki, T., Nomoto, A. and Kubo, T. (2004). Novel insect picorna-like virus identified in the brains of aggressive worker honeybees. J. Virol. 78: 1093-1100.

Geng, P., Li, W., Lin, L., de Miranda, J.R., Emrich, S., An, L. and Terenius, O. (2014). Genetic characterization of a novel iflavirus associated with vomiting disease in the Chinese oak silkmoth Antheraea pernyi. PLoS One 9(3): e92107.

Ghosh, R.C., Ball, B.V., Willcocks, M.M. and Carter, M.J. (1999). The nucleotide sequence of sacbrood virus of the honey bee: an insect picorna-like virus. J. Gen. Virol. 80: 1541-1549.

Isawa, H., Asano, S., Sahara, K., Iizuka, T. and Bando, H. (1998). Analysis of genetic information of an insect picorna-like virus, infectious flacherie virus of silkworm: evidence for evolutionary relationships among insect, mammalian and plant picorna(-like) viruses. Arch. Virol. 143: 127-143.

Jianxun, F., Jianxiu, Y. and Jingqing Z. Structural protein VP1 of Chinese Sacbrood virus. Unpublished. [ School of Life Science, State Key Laboratory for Biocontrol, 135 Xingangxi Road, Guangzhou, Guangdong 510275, P. R. China]  

Lanzi, G., de Miranda, J.R., Boniotti, M.B., Cameron, C.E., Lavazza, A., Capucci, L., Camazine, S.M. and Rossi, C. (2006). Molecular and biological characterization of deformed wing virus of honeybees (Apis mellifera L.). J Virol. 80: 4998-5009.

Le, T.H., Nguyen, B.N. and Pham, V.L. Molecular identification and phylogenetic analysis of sacbrood virus isolated in Viet Nam. [Immunology Department, National Institute of Biotechnology (IBT), 18. Hoang Quoc Viet Rd., Cau Giay District, Hanoi 10000, Viet Nam]

Li, M.Q., Lu, Q.N., Wu, X.F., Man, N.N., Chen, X.X., Jin, W. and Lu, X.M. (2009). Analysis of RNA-dependent RNA polymerase sequence of infectious flacherie virus isolated in China and its expression in BmN cells. Agric. Sci. China 8: 872-879.

Lu, Q.N. and Lu, X.M. A strain of infectious flacherie virus was isolated in China: histopathological study and RNA-dependent RNA polymerase sequence analysis. Unpublished. [Lab. Invertebrate Pathology, College of Animal Science, ZheJiang University, 268# KaiXuang Road, HangZhou, ZheJiang 310029, China]

Millán-Leiva, A., Jakubowska, A.K., Ferré, J., Herrero, S. (2012). Genome sequence of SeIV-1, a novel virus from the Iflaviridae family infective to Spodoptera exigua. J. Invertebr. Pathol. 109: 127-133.

Mordecai, G.J., Brettell, L.E., Pachori, P., Villalobos, E.M., Martin, S.J., Jones, I.M. and Schroeder, D.C. (2016). Moku virus; a new iflavirus found in wasps, honey bees and Varroa. Sci. Rep. 6: 34983.

Murakami, R., Suetsugu, Y., Kobayashi, T. and Nakashima, N. (2013). The genome sequence and transmission of an iflavirus from the brown planthopper, Nilaparvata lugens. Virus Res. 176: 179-187.

Murakami, R., Suetsugu, Y. and Nakashima, N. (2014). Complete genome sequences of two iflaviruses from the brown planthopper, Nilaparvata lugens. Arch. Virol. 159: 585-588.

Oliveira, D.C., Hunter, W.B., Ng, J., Desjardins, C.A., Dang, P.M., Werren, J.H. (2010). Data mining cDNAs reveals three new single stranded RNA viruses in Nasonia (Hymenoptera: Pteromalidae). Insect Mol Biol. 19 Suppl 1:99-107.

Ongus, J.R., Peters, D., Bonmatin, J.M., Bengsch, E., Vlak, J.M. and van Oers M.M. (2004). Complete sequence of a picorna-like virus of the genus Iflavirus replicating in the mite Varroa destructor. J. Gen. Virol. 85: 3747-3755.

Perera, O.P., Snodgrass, G.L., Allen, K.C., Jackson, R.E., Becnel, J.J., O'Leary, P.F. and Luttrell, R.G. (2012). The complete genome sequence of a single-stranded RNA virus from the tarnished plant bug, Lygus lineolaris (Palisot de Beauvois). J. Invertebr. Pathol. 109: 11-19.

Ribiere, M., Schurr, F. and Lallemand, P. SBV RT-PCR detection. Unpublished. [Unite Abeille, AFSSA, 105 route des Chappes, Sophia-Antipolis 06902, France]

Reineke, A. and Asgari, S.(2005). Presence of a novel small RNA-containing virus in a laboratory culture of the endoparasitic wasp Venturia canescens (Hymenoptera: Ichneumonidae).  J. Insect Physiol. 51: 127-135.

Ryabov, E.V. (2007). A novel virus isolated from the aphid Brevicoryne brassicae with similarity to Hymenoptera picorna-like viruses. J. Gen. Virol. 88: 2590-2595.

Sakuna, K., Elliman, J. and Owens, L. (2017). Discovery of a novel Picornavirales, Chequa iflavirus, from stressed redclaw crayfish (Cherax quadricarinatus) from farms in northern Queensland, Australia. Virus Res. 238: 148-155.

Sakuna, K., Elliman, J. and Owens, L. (2018). Comparison of molecular detection PCR methods for chequa iflavirus in freshwater crayfish, Cherax quadricarinatus. J. Virol. Methods 251: 139-144.

Silva, L.A., Ardisson-Araujo, D.M., Tinoco, R.S., Fernandes, O.A., Melo, F.L. and Ribeiro, B.M. (2015). Complete genome sequence and structural characterization of a novel iflavirus isolated from Opsiphanes invirae (Lepidoptera: Nymphalidae). J. Invertebr. Pathol. 130: 136-140.

Smith, G., Macias-Muñoz, A. and Briscoe, A.D. (2014). Genome sequence of a novel iflavirus from mRNA sequencing of the butterfly Heliconius erato. Genome Announc. 2(3). pii: e00398-14.

Sparks, M.E., Gundersen-Rindal, D.E. and Harrison, R.L. (2013). Complete genome sequence of a novel iflavirus from the transcriptome of Halyomorpha halys, the brown marmorated stink bug. Genome Announc. 1(6).

Suzuki, T., Takeshima, Y., Mikamoto, T., Saeki, J.D., Kato, T., Park, E.Y., Kawagishi, H. and Dohra, H. (2015). Genome sequence of a novel iflavirus from mRNA sequencing of the pupa of Bombyx mori inoculated with Cordyceps militaris. Genome Announc. 3(5). pii: e01039-15.

Wang, X., Zhang, J., Lu, J., Yi, F., Liu, C. and Hu, Y. (2004). Sequence analysis and genomic organization of a new insect picorna-like virus, Ectropis obliqua picorna-like virus, isolated from Ectropis obliqua. J Gen Virol. 2004 May;85(Pt 5):1145-51.

Wang, H., Xie, J., Shreeve, T.G., Ma, J., Pallett, D.W., King, L.A. and Possee, R.D. (2013). Sequence recombination and conservation of Varroa destructor virus-1 and deformed wing virus in field collected honey bees (Apis mellifera). PLoS ONE 8 (9), E74508.

Webster, C.L., Waldron, F.M., Robertson, S., Crowson, D., Ferrari, G., Quintana, J.F., Brouqui, J.M., Bayne, E.H., Longdon, B., Buck, A.H., Lazzaro, B.P., Akorli, J., Haddrill, P.R. and Obbard, D.J. (2015). The discovery, distribution, and evolution of viruses associated with Drosophila melanogaster. PLoS Biol. 13: e1002210.

Webster, C.L., Longdon, B., Lewis, S.H. and Obbard, D.J. (2016). Twenty-five new viruses associated with the Drosophilidae (Diptera). Evol. Bioinform. Online. 2016 Jun 20;12(Suppl 2): 13-25.

Wu, C.-Y., Lo, C.-F., Huang, C.-J., Yu, H.-T. and Wang, C.-H. (2002). The complete genome sequence of Perina nuda picorna-like virus, an insect-infecting RNA virus with a genome organization similar to that of the mammalian picornaviruses. Virology 294: 312-323.

Zhang, Q., Luo, J. and Zhang, J. The primary sequence and 3-D structure of Chinese Sacbrood bee virus RNA. Unpublished. [State Key Lab for Biocontrol, Zhongshan University, Xin-Gang Xi Road 135#, Guangzhou, Guangdong 510275, P.R. China]

Zioni, N., Soroker, V. and Chejanovsky, N. (2011). Replication of Varroa destructor virus 1 (VDV-1) and a Varroa destructor virus 1-deformed wing virus recombinant (VDV-1-DWV) in the head of the honey bee. Virology 417: 106-112.

 
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