Iflavirus seqs
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Virus

Strain

Region

Length

Accession No. Reference Comments
Group A
Infectious flacherie virus (IFV)
IFV ? CG 9650 AB000906 Isawa et al., 1998 polyprotein contains an NPG/P site
IFV ZheJiang01/CHN pol 1920 EF422865 Lu and Lu, unpub. China
IFV Karnataka01/IND pol 1920 EF422866 Lu and Lu, unpub. India
 
Group B
Sacbrood virus (SBV)
SBV Rothamstead CG 8832 AF092924

Ghosh et al., 1999

 
SBV Chinese SBV VP1 1038 AF251124

Jianxun et al., unpub.

 
CG 8740 AF469603

Zhang et al., unpub.

 
SBV Sophia1 R80 capsid(p)? 443 AY152712 Ribiere et al., unpub.  
non-structural(p) 732 AY152713 Ribiere et al., unpub.  
SBV Riez2002 capsid(p)? 443 AY152711 Ribiere et al., unpub.  
non-structural(p) 732 AY152714 Ribiere et al., unpub.  
SBV Hai Hung (Vietnam) pol(p) 880 AY311387 Le et al., unpub.  
 
Group C
Perina nuda virus (PnV)
PnV ? CG 9476 AF323747

Wu et al., 2002

polyprotein contains 2 NPG/P sites
Evtropis obliqua virus (EoV)
EoV ? CG* 8067 AY341824

Wang et al., 2004

polyprotein contains 2 NPG/P sites
* ~1400 nt missing from 5' end of the genome.
 
Group D
Deformed wing virus (DWV)
DWV Italy CG 10131 AJ489744

Lanzi et al., 2006

polyprotein contains an NPG/P site
DWV PA CG 10166 AY292384

Lanzi et al., 2006

polyprotein contains an NPG/P site
DWV AUSTRIA-1 various 4596 DQ224278 Berenyi et al., 2007  
DWV AUSTRIA-2 VP2-VP1 & hel 1426 DQ224279 Berenyi et al., 2007  
DWV AUSTRIA-3 VP2-VP1 & hel 1426 DQ224280 Berenyi et al., 2007  
DWV AUSTRIA-4 VP2-VP1 & hel 1426 DQ224281 Berenyi et al., 2007  
DWV AUSTRIA-5 VP2-VP1 & hel 1426 DQ224282 Berenyi et al., 2007  
DWV AUSTRIA-6 VP2-VP1 & hel 1426 DQ224283 Berenyi et al., 2007  
DWV AUSTRIA-7 VP2-VP1 & hel 1426 DQ224284 Berenyi et al., 2007  
DWV AUSTRIA-8 VP2-VP1 & hel 1426 DQ224285 Berenyi et al., 2007  
DWV AUSTRIA-9 VP2-VP1 & hel 1426 DQ224286 Berenyi et al., 2007  
DWV POLAND-1 VP2-VP1 & hel 1426 DQ224287 Berenyi et al., 2007  
DWV POLAND-2 VP2-VP1 & hel 1426 DQ224288 Berenyi et al., 2007  
DWV POLAND-3 VP2-VP1 & hel 1426 DQ224289 Berenyi et al., 2007  
DWV POLAND-4 VP2-VP1 & hel 1426 DQ224290 Berenyi et al., 2007  
DWV POLAND-5 VP2-VP1 & hel 1426 DQ224291 Berenyi et al., 2007  
DWV GERMANY-1 VP2-VP1 & hel 1426 DQ224292 Berenyi et al., 2007  
DWV GERMANY-2 VP2-VP1 & hel 1426 DQ224293 Berenyi et al., 2007  
DWV GERMANY-3 VP2-VP1 & hel 1426 DQ224294 Berenyi et al., 2007  
DWV HUNGARY-1 VP2-VP1 & hel 1426 DQ224295 Berenyi et al., 2007  
DWV HUNGARY-2 VP2-VP1 & hel 1426 DQ224296 Berenyi et al., 2007  
DWV HUNGARY-3 VP2-VP1 & hel 1426 DQ224297 Berenyi et al., 2007  
DWV HUNGARY-4 VP2-VP1 & hel 1426 DQ224298 Berenyi et al., 2007  
DWV HUNGARY-5 VP2-VP1 & hel 1426 DQ224299 Berenyi et al., 2007  
DWV SLOVENIA-1 VP2-VP1 & hel 1426 DQ224300 Berenyi et al., 2007  
DWV SLOVENIA-2 VP2-VP1 & hel 1426 DQ224301 Berenyi et al., 2007  
DWV SLOVENIA-3 VP2-VP1 & hel 1426 DQ224302 Berenyi et al., 2007  
DWV SLOVENIA-4 VP2-VP1 & hel 1426 DQ224303 Berenyi et al., 2007  
DWV NEPAL-1 VP2-VP1 & hel 1426 DQ224304 Berenyi et al., 2007  
DWV NEPAL-2 VP2-VP1 & hel 1426 DQ224305 Berenyi et al., 2007  
DWV SRI LANKA-1 VP2-VP1 & hel 1426 DQ224306 Berenyi et al., 2007  
DWV SRI LANKA-2 VP2-VP1 & hel 1426 DQ224307 Berenyi et al., 2007  
DWV U.A.E.-1 VP2-VP1 & hel 1426 DQ224308 Berenyi et al., 2007  
DWV U.A.E.-2 VP2-VP1 & hel 1426 DQ224309 Berenyi et al., 2007  
DWV CANADA-1 VP2-VP1 & hel 1426 DQ224310 Berenyi et al., 2007  
DWV CANADA-2 VP2-VP1 & hel 1426 DQ224311 Berenyi et al., 2007
             
Kakugo virus  (KV)
KV ? CG 10152 AB070959

Fujiyuki et al., 2004

polyprotein contains an NPG/P site
Varroa destructor virus-1 (VDV)
VDV Wageningen, Netherlands CG 10112 AY251269

Ongus et al., 2004

 
 
Group E
Venturia canescens picorna-like virus (VcPLV)
VcPLV VcSRV pol 2103 AY534885

Reineke and Asgari, 2005

 
 
Ungrouped
Brevicoryne brassicae picorna-like virus (BBPLV)
BBPLV Warwick, UK CG 10180 EF517277 Ryabov, 2007
             
Honey bee slow paralysis virus (BSPV)
BSPV UK/1986 CG 9505 EU035616 deMiranda et al., unpub.  
 
CG = complete genome; (p) = partial gene sequence; N/A = not available on the EMBL/GenBank/DDBJ databases

References

deMiranda, J.R., Ball, B.V., Stoltz, D.B. and Paxton, R.A. Sequence and analysis of slow paralysis virus, an Iflavirus of honey bees (Apis mellifera). Unpublished. [Biological Sciences, Queens University Belfast, 97 Lisburn Road, Belfast, Antrim BT9 7BL, Northern Ireland]

Fujiyuki, T., Takeuchi, H., Ono, M., Ohka, S., Sasaki, T., Nomoto, A. and Kubo, T. (2004). Novel insect picorna-like virus identified in the brains of aggressive worker honeybees. J. Virol. 78: 1093-1100.

Ghosh, R.C., Ball, B.V., Willcocks, M.M. and Carter, M.J. (1999). The nucleotide sequence of sacbrood virus of the honey bee: an insect picorna-like virus. J. Gen. Virol. 80: 1541-1549.

Isawa, H., Asano, S., Sahara, K., Iizuka, T. and Bando, H. (1998). Analysis of genetic information of an insect picorna-like virus, infectious flacherie virus of silkworm: evidence for evolutionary relationships among insect, mammalian and plant picorna(-like) viruses. Arch. Virol. 143: 127-143.

Jianxun, F., Jianxiu, Y. and Jingqing Z. Structural protein VP1 of Chinese Sacbrood virus. Unpublished. [ School of Life Science, State Key Laboratory for Biocontrol, 135 Xingangxi Road, Guangzhou, Guangdong 510275, P. R. China]  

Lanzi, G., de Miranda, J.R., Boniotti, M.B., Cameron, C.E., Lavazza, A., Capucci, L., Camazine, S.M. and Rossi, C. (2006). Molecular and biological characterization of deformed wing virus of honeybees (Apis mellifera L.). J Virol. 80: 4998-5009.

Le, T.H., Nguyen, B.N. and Pham, V.L. Molecular identification and phylogenetic analysis of sacbrood virus isolated in Viet Nam. [Immunology Department, National Institute of Biotechnology (IBT), 18. Hoang Quoc Viet Rd., Cau Giay District, Hanoi 10000, Viet Nam]

Lu, Q.N. and Lu, X.M. A strain of infectious flacherie virus was isolated in China: histopathological study and RNA-dependent RNA polymerase sequence analysis. Unpublished. [Lab. Invertebrate Pathology, College of Animal Science, ZheJiang University, 268# KaiXuang Road, HangZhou, ZheJiang 310029, China]

Ongus, J.R., Peters, D., Bonmatin, J.M., Bengsch, E., Vlak, J.M. and van Oers M.M. (2004). Complete sequence of a picorna-like virus of the genus Iflavirus
replicating in the mite Varroa destructor. J. Gen. Virol. 85: 3747-3755.

Ribiere, M., Schurr, F. and Lallemand, P. SBV RT-PCR detection. Unpublished. [Unite Abeille, AFSSA, 105 route des Chappes, Sophia-Antipolis 06902, France]

Reineke, A. and Asgari, S.(2005). Presence of a novel small RNA-containing virus in a laboratory culture of the endoparasitic wasp Venturia canescens (Hymenoptera: Ichneumonidae).  J. Insect Physiol. 51: 127-135.

Ryabov, E.V. (2007). A novel virus isolated from the aphid Brevicoryne brassicae with similarity to Hymenoptera picorna-like viruses. J. Gen. Virol. 88: 2590-2595.

Wang, X., Zhang, J., Lu, J., Yi, F., Liu, C. and Hu, Y. (2004). Sequence analysis and genomic organization of a new insect picorna-like virus, Ectropis obliqua picorna-like virus, isolated from Ectropis obliqua. J Gen Virol. 2004 May;85(Pt 5):1145-51.

Wu, C.-Y., Lo, C.-F., Huang, C.-J., Yu, H.-T. and Wang, C.-H. (2002). The complete genome sequence of Perina nuda picorna-like virus, an insect-infecting RNA virus with a genome organization similar to that of the mammalian picornaviruses. Virology 294: 312-323.

Zhang, Q., Luo, J. and Zhang, J. The primary sequence and 3-D structure of Chinese Sacbrood bee virus RNA. Unpublished. [State Key Lab for Biocontrol, Zhongshan University, Xin-Gang Xi Road 135#, Guangzhou, Guangdong 510275, P.R. China]

 
Copyright © 2006 Institute for Animal Health, UK.