

|
|
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
| Group A |
|
Infectious flacherie virus (IFV) |
|
IFV |
? |
CG |
9650 |
AB000906 |
Isawa et al., 1998 |
polyprotein contains an NPG/P
site |
|
IFV |
ZheJiang01/CHN |
CG |
9665 |
EU868609 |
Lu et al., 2009 |
China |
|
IFV |
Karnataka01/IND |
pol |
1920 |
EF422866 |
Lu et al., unpub. |
India |
| |
| Group B |
| Sacbrood
virus (SBV) |
|
SBV |
Rothamstead |
CG |
8832 |
AF092924 |
Ghosh et al.,
1999 |
|
|
SBV |
Chinese SBV |
VP1 |
1038 |
AF251124 |
Jianxun et al.,
unpub. |
|
| CG |
8740 |
AF469603 |
Zhang et al., unpub. |
|
|
SBV |
Sophia1 R80 |
capsid(p)? |
443 |
AY152712 |
Ribiere et al.,
unpub. |
|
| non-structural(p) |
732 |
AY152713 |
Ribiere et al.,
unpub. |
|
|
SBV |
Riez2002 |
capsid(p)? |
443 |
AY152711 |
Ribiere et al.,
unpub. |
|
| non-structural(p) |
732 |
AY152714 |
Ribiere et al.,
unpub. |
|
|
SBV |
Hai Hung (Vietnam) |
pol(p) |
880 |
AY311387 |
Le et al.,
unpub. |
|
|
|
| Group C |
| Perina nuda virus (PnV) |
|
PnV |
? |
CG |
9476 |
AF323747 |
Wu et al., 2002 |
polyprotein contains 2 NPGP
sites |
| Evtropis obliqua virus (EoV) |
|
EoV |
? |
CG* |
8067 |
AY341824 |
Wang et al., 2004 |
polyprotein contains 2 NPGP
sites
* ~1400 nt missing from 5' end of the genome. |
|
|
| Group D |
| Deformed wing
virus (DWV) |
|
DWV |
Italy |
CG |
10131 |
AJ489744 |
Lanzi
et al., 2006 |
polyprotein contains an NPGP
motif |
|
DWV |
PA |
CG |
10166 |
AY292384 |
Lanzi
et al., 2006 |
polyprotein contains an NPGP
motif |
|
DWV |
Warwick-2009 |
CG |
10167 |
GU109335 |
Bouleau Jamois et al., unpub. |
polyprotein contains an NPGP
motif |
|
DWV |
VDV-1-DWV-No-5 |
CG |
10149 |
HM067437 |
Ryabov and Moore, unpub. |
polyprotein contains an NPGP
motif |
|
DWV |
VDV-1-DWV-No-9 |
CG |
10154 |
HM067438 |
Ryabov and Moore, unpub. |
polyprotein contains an NPGP
motif |
|
DWV |
AUSTRIA-1 |
various |
4596 |
DQ224278 |
Berenyi
et al.,
2007 |
|
|
DWV |
AUSTRIA-2 |
VP2-VP1 & hel |
1426 |
DQ224279 |
Berenyi
et al.,
2007 |
|
|
DWV |
AUSTRIA-3 |
VP2-VP1 & hel |
1426 |
DQ224280 |
Berenyi
et al.,
2007 |
|
|
DWV |
AUSTRIA-4 |
VP2-VP1 & hel |
1426 |
DQ224281 |
Berenyi
et al.,
2007 |
|
|
DWV |
AUSTRIA-5 |
VP2-VP1 & hel |
1426 |
DQ224282 |
Berenyi
et al.,
2007 |
|
|
DWV |
AUSTRIA-6 |
VP2-VP1 & hel |
1426 |
DQ224283 |
Berenyi
et al.,
2007 |
|
|
DWV |
AUSTRIA-7 |
VP2-VP1 & hel |
1426 |
DQ224284 |
Berenyi
et al.,
2007 |
|
|
DWV |
AUSTRIA-8 |
VP2-VP1 & hel |
1426 |
DQ224285 |
Berenyi
et al.,
2007 |
|
|
DWV |
AUSTRIA-9 |
VP2-VP1 & hel |
1426 |
DQ224286 |
Berenyi
et al.,
2007 |
|
|
DWV |
POLAND-1 |
VP2-VP1 & hel |
1426 |
DQ224287 |
Berenyi
et al.,
2007 |
|
|
DWV |
POLAND-2 |
VP2-VP1 & hel |
1426 |
DQ224288 |
Berenyi
et al.,
2007 |
|
|
DWV |
POLAND-3 |
VP2-VP1 & hel |
1426 |
DQ224289 |
Berenyi
et al.,
2007 |
|
|
DWV |
POLAND-4 |
VP2-VP1 & hel |
1426 |
DQ224290 |
Berenyi
et al.,
2007 |
|
|
DWV |
POLAND-5 |
VP2-VP1 & hel |
1426 |
DQ224291 |
Berenyi
et al.,
2007 |
|
|
DWV |
GERMANY-1 |
VP2-VP1 & hel |
1426 |
DQ224292 |
Berenyi
et al.,
2007 |
|
|
DWV |
GERMANY-2 |
VP2-VP1 & hel |
1426 |
DQ224293 |
Berenyi
et al.,
2007 |
|
|
DWV |
GERMANY-3 |
VP2-VP1 & hel |
1426 |
DQ224294 |
Berenyi
et al.,
2007 |
|
|
DWV |
HUNGARY-1 |
VP2-VP1 & hel |
1426 |
DQ224295 |
Berenyi
et al.,
2007 |
|
|
DWV |
HUNGARY-2 |
VP2-VP1 & hel |
1426 |
DQ224296 |
Berenyi
et al.,
2007 |
|
|
DWV |
HUNGARY-3 |
VP2-VP1 & hel |
1426 |
DQ224297 |
Berenyi
et al.,
2007 |
|
|
DWV |
HUNGARY-4 |
VP2-VP1 & hel |
1426 |
DQ224298 |
Berenyi
et al.,
2007 |
|
|
DWV |
HUNGARY-5 |
VP2-VP1 & hel |
1426 |
DQ224299 |
Berenyi
et al.,
2007 |
|
|
DWV |
SLOVENIA-1 |
VP2-VP1 & hel |
1426 |
DQ224300 |
Berenyi
et al.,
2007 |
|
|
DWV |
SLOVENIA-2 |
VP2-VP1 & hel |
1426 |
DQ224301 |
Berenyi
et al.,
2007 |
|
|
DWV |
SLOVENIA-3 |
VP2-VP1 & hel |
1426 |
DQ224302 |
Berenyi
et al.,
2007 |
|
|
DWV |
SLOVENIA-4 |
VP2-VP1 & hel |
1426 |
DQ224303 |
Berenyi
et al.,
2007 |
|
|
DWV |
NEPAL-1 |
VP2-VP1 & hel |
1426 |
DQ224304 |
Berenyi
et al.,
2007 |
|
|
DWV |
NEPAL-2 |
VP2-VP1 & hel |
1426 |
DQ224305 |
Berenyi
et al.,
2007 |
|
|
DWV |
SRI LANKA-1 |
VP2-VP1 & hel |
1426 |
DQ224306 |
Berenyi
et al.,
2007 |
|
|
DWV |
SRI LANKA-2 |
VP2-VP1 & hel |
1426 |
DQ224307 |
Berenyi
et al.,
2007 |
|
|
DWV |
U.A.E.-1 |
VP2-VP1 & hel |
1426 |
DQ224308 |
Berenyi
et al.,
2007 |
|
|
DWV |
U.A.E.-2 |
VP2-VP1 & hel |
1426 |
DQ224309 |
Berenyi
et al.,
2007 |
|
|
DWV |
CANADA-1 |
VP2-VP1 & hel |
1426 |
DQ224310 |
Berenyi
et al.,
2007 |
|
|
DWV |
CANADA-2 |
VP2-VP1 & hel |
1426 |
DQ224311 |
Berenyi et al.,
2007 |
|
|
|
|
|
|
|
|
|
| Kakugo virus
(KV) |
|
KV |
? |
CG |
10152 |
AB070959 |
Fujiyuki et al.,
2004 |
polyprotein contains an NPG/P
site |
| Varroa
destructor virus-1 (VDV) |
|
VDV |
Wageningen, Netherlands |
CG |
10112 |
AY251269 |
Ongus et al., 2004 |
|
|
|
| Group E |
|
Venturia canescens picorna-like virus (VcPLV) |
|
VcPLV |
VcSRV |
pol |
2103 |
AY534885 |
Reineke and Asgari, 2005 |
|
|
|
| Ungrouped |
| Brevicoryne brassicae
picorna-like virus (BBPLV) |
|
BBPLV |
Warwick, UK |
CG |
10180 |
EF517277 |
Ryabov, 2007 |
|
|
|
|
|
|
|
|
|
|
Honey bee slow paralysis virus (BSPV) |
|
BSPV |
Rothamsted (UK, 1986) |
CG |
9505 |
EU035616 |
de Miranda et al., 2010 |
|
|
BSPV |
Harpenden (UK, 1986) |
CG |
9424 |
GU938761 |
de Miranda et al., 2010 |
|
|
|
|
CG = complete genome; (p) = partial gene
sequence; N/A = not available on the EMBL/GenBank/DDBJ databases |
de Miranda, J., Dainat, B., Locke, B., Cordoni, G.,
Berthoud, H., Gauthier, L., Neumann, P., Budge, G.E., Ball, B.V. and Stoltz,
D.B. (2010). Genetic characterisation of slow paralysis virus of the
honeybee (Apis mellifera L.). J. Gen. Virol., In press.
Fujiyuki, T., Takeuchi, H., Ono, M., Ohka,
S., Sasaki, T., Nomoto, A. and Kubo, T. (2004). Novel insect picorna-like
virus identified in the brains of aggressive worker honeybees. J. Virol. 78:
1093-1100.Ghosh, R.C., Ball, B.V., Willcocks, M.M.
and Carter, M.J. (1999). The nucleotide sequence of sacbrood virus of the
honey bee: an insect picorna-like virus. J. Gen. Virol. 80: 1541-1549.
Isawa, H., Asano, S., Sahara, K., Iizuka,
T. and Bando, H. (1998). Analysis of genetic information of an insect
picorna-like virus, infectious flacherie virus of silkworm: evidence for
evolutionary relationships among insect, mammalian and plant picorna(-like)
viruses. Arch. Virol. 143: 127-143.
Jianxun, F., Jianxiu, Y. and Jingqing Z.
Structural protein VP1 of Chinese Sacbrood virus. Unpublished. [ School of
Life Science, State Key Laboratory for Biocontrol, 135 Xingangxi Road,
Guangzhou, Guangdong 510275, P. R. China]
Lanzi, G., de Miranda, J.R., Boniotti, M.B., Cameron, C.E.,
Lavazza, A., Capucci, L., Camazine, S.M. and Rossi, C. (2006). Molecular and
biological characterization of deformed wing virus of honeybees (Apis
mellifera L.). J Virol. 80: 4998-5009.
Le, T.H., Nguyen, B.N. and Pham, V.L.
Molecular identification and phylogenetic analysis of sacbrood virus
isolated in Viet Nam. [Immunology Department, National Institute of
Biotechnology (IBT), 18. Hoang Quoc Viet Rd., Cau Giay District, Hanoi
10000, Viet Nam]
Li, M.Q., Lu, Q.N., Wu, X.F., Man, N.N., Chen, X.X., Jin,
W. and Lu, X.M. (2009). Analysis of RNA-dependent RNA polymerase sequence of
infectious flacherie virus isolated in China and its expression in BmN
cells. Agric. Sci. China 8: 872-879.
Lu, Q.N. and Lu, X.M. A strain of infectious flacherie
virus was isolated in China: histopathological study and RNA-dependent RNA
polymerase sequence analysis. Unpublished. [Lab. Invertebrate Pathology,
College of Animal Science, ZheJiang University, 268# KaiXuang Road, HangZhou,
ZheJiang 310029, China]
Ongus, J.R., Peters, D., Bonmatin, J.M.,
Bengsch, E., Vlak, J.M. and van Oers M.M. (2004). Complete sequence of a
picorna-like virus of the genus Iflavirus
replicating in the mite Varroa destructor. J. Gen. Virol. 85: 3747-3755.
Ribiere, M., Schurr, F. and Lallemand, P.
SBV RT-PCR detection. Unpublished. [Unite Abeille, AFSSA, 105 route des
Chappes, Sophia-Antipolis 06902, France]
Reineke, A. and Asgari, S.(2005). Presence
of a novel small RNA-containing virus in a laboratory culture of the
endoparasitic wasp Venturia canescens (Hymenoptera: Ichneumonidae).
J. Insect Physiol. 51: 127-135.
Ryabov, E.V. (2007). A novel virus isolated from the aphid
Brevicoryne brassicae with similarity to Hymenoptera picorna-like
viruses. J. Gen. Virol. 88: 2590-2595.
Wang, X., Zhang, J., Lu, J., Yi, F., Liu,
C. and Hu, Y. (2004). Sequence analysis and genomic organization of a new
insect picorna-like virus, Ectropis obliqua picorna-like virus, isolated
from Ectropis obliqua. J Gen Virol. 2004 May;85(Pt 5):1145-51.
Wu, C.-Y., Lo, C.-F., Huang, C.-J., Yu,
H.-T. and Wang, C.-H. (2002). The complete genome sequence of Perina nuda
picorna-like virus, an insect-infecting RNA virus with a genome organization
similar to that of the mammalian picornaviruses. Virology 294: 312-323.
Zhang, Q., Luo, J. and Zhang, J. The
primary sequence and 3-D structure of Chinese Sacbrood bee virus RNA.
Unpublished. [State Key Lab for Biocontrol, Zhongshan University, Xin-Gang
Xi Road 135#, Guangzhou, Guangdong 510275, P.R. China]
|