Dicistroviridae seqs
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Genus Cripavirus

Virus

Strain

Region

Length

Accession No. Reference Comments
 
Species: Cricket paralysis virus (CrPV)
CrPV ? 3' end of genome 1594 M21938 King et al., 1987  
CrPV ? CG 9185 AF218039 Wilson et al., 2000 ORF1 contains an NPGP site
 
Species: Drosophila C virus (DCV)
DCV EB CG 9264 AF014388 Johnson and Christian, 1998 ORF1 contains an NPGP site
 
Species: Himetobi P virus (HiPV)
HiPV ? CG 9275 AB017037 Nakashima et al., 1999  
HiPV Izumo CG 9275 AB183472 Nakashima et al., 2006 Japan:Shimane, Izumo
 
Species: Plautia stali intestine virus (PSIV)
PSIV ? CG 8797 AB006531 Sasaki et al., 1998  
 
Species: Rhopalosiphum padi virus (RhPV)
RhPV ? CG 10011 AF022937 Moon et al., 1998  
 
Species: Black queen cell virus (BQCV)
BQCV Rothamstead helicase domain C 815 AF125252

Ghosh et al., 1999a (unpublished)

from GenBank
BQCV South African CG 8550 AF183905

Leat et al., 2000

 
BQCV AFSSA 2002 hive 78 pol(p) 606 AY230509 Ribiere et al., unpub. (b)  
BQCV AFSSA 2002 hive 222 pol(p) 606 AY230510 Ribiere et al., unpub. (b)  
BQCV AFSSA 2002 hive 23 pol(p) 606 AY230511 Ribiere et al., unpub. (b)  
 
Species: Triatoma virus (TrV)
TrV   CG 9010 AF178440

Czibener et al., 2000

 
 
Species: Aphid lethal paralysis virus (ALPV)
ALPV ? CG 9812 AF536531

Van Munster et al., 2002

 
 
Unassigned species in the family

Virus

Strain

Region

Length

Accession No. Reference Comments
 
Species: Acute bee paralysis virus (ABPV)
ABPV ? pol(p) 84 AF038361 A.C.F. Hung, unpublished from England; isolated from crude extract
ABPV Rothamsted capsid(p) 467 AF126050 Ghosh et al., 1999b (unpublished)  
ABPV ? CG 9491 AF150629 Govan and Davison, 2000 ORF1 contains an NPGP site
ABPV Hungary 1 capsid(p) 398 AY059372 Bakonyi et al., 2002a  
ABPV Hungary 1 CG 9459 AF486072;
AY053373
Bakonyi et al., 2002b ORF1 contains an NPGP site
ABPV Poland 1 CG 9463 AF486073;
AY053369
Bakonyi et al., 2002b ORF1 contains an NPGP site
ABPV ? (France, 1990) capsid(p) 374 AY152709 Ribiere et al., unpub. (a)  
ABPV ? (France, 1990) capsid(p) 374 AY152710 Ribiere et al., unpub. (a)  
 
Kashmir bee virus (KBV)
KBV Pennsylvania CG 9524 AY275710 De Miranda et al., 2004  
KBV Canada capsid 2525 AY452696 De Miranda et al., 2004  
KBV ? pol(p) 414 AF052567 A.C.F. Hung, unpublished from parasitic mites, Varroa jacobsoni, found in a
honey bee colony in California, USA
KBV ? pol(p) 414 AF052566 A.C.F. Hung, unpublished from a single honey bee in California, USA
KBV ? pol(p) 414 AF037591 A.C.F. Hung, unpublished from a single honey bee in Maryland, USA
KBV ? pol(p) 414 AF035359 A.C.F. Hung, unpublished from Maine, USA; isolated from crude extract
KBV Canadian pol(p) 414 AF034542 A.C.F. Hung, unpublished  
KBV Australian pol(p) 414 AF034541 A.C.F. Hung, unpublished  
KBV ? pol(p) 414 AF027125 Hung and Shimanuki, 1999  
KBV ? pol(p) 180 AF056044

Hung and Shimanuki, unpublished (a)

from a single honey bee in Maryland, USA
KBV ? pol(p) 414 AF083239 Hung et al., unpublished (a) direct RT-PCR of crude viral extract from one mite
infested honey bee, Apis mellifera
KBV 941227B-1 pol(p) 414 AF085478 Hung et al., unpublished (a) direct RT-PCR of crude viral extract from an Apis
mellifera
bee inoculated with Varroa mite
KBV 941227B-3 pol(p) 414 AF085479 Hung et al., unpublished (a) direct RT-PCR of crude viral extract from an Apis
mellifera
bee inoculated with Varroa mite
KBV 980824E-1 (California) pol(p) 414 AF093457 A.C.F. Hung, unpublished  
KBV 980824E-2 (California) pol(p) 414 AF093458 A.C.F. Hung, unpublished  
KBV 980828D-1 (California) pol(p) 414 AF093459 A.C.F. Hung, unpublished  
KBV 980828D-2 (California) pol(p) 414 AF093460 A.C.F. Hung, unpublished  
KBV Leamington, Canada pol(p) 547 AF117308 Hung and Shimanuki, unpublished (b)  
KBV ? pol(p) 414 AF117953 Hung et al., unpublished (b) direct RT-PCR of Kashmir bee virus extract from one
Apis mellifera infested by Varroa mites
 
Taura syndrome virus (TSV)
TSV Mexico/99 capsid 3278 AF277378

Robles-Sikisaka et al., 2001

 
TSV Hawaii CG 10205 AF277675

Mari et al., 2002

 
TSV Belize CG 9922 AY590471 Tang and Lightner, 2005  
TSV Th04Lv (Thailand) CG 10205 AY997025 Srisuvan et al., 2005  
TSV ZHZC3TSV CG 10202 DQ104696 Huang and Lu, unpublished  
TSV Venezuela CG 10095 DQ212790 Navarro et al., unpublished  
TSV ? (Taiwan) capsid 3288 AF406789 Lien et al., unpublished  
TSV Tw2KPmTSV capsid 3036 AY355309 Chang et al., 2004 Taiwan: south coastal waters, 2000;
host: Penaeus monodon
TSV Tw2KMeTSV capsid 3036 AY355310 Chang et al., 2004 local fish market, Taiwan, 2000;
host: Metapenaeus ensis
TSV Tw02PvTSV capsid 3036 AY355311 Chang et al., 2004 culture pond with recent TSV outbreak,
Taiwan: southern region , 2002;
host: Penaeus vannamei
 
Solenopsis invicta virus-1 (SINV-1)
SINV-1 ? CG 8026 AY634314 Valles et al., 2004  
SINV-1A ? capsid 2864 AY831776 Valles and Strong, 2005  
 
Unassigned viruses within the family

Virus

Strain

Region

Length

Accession No. Reference Comments
 
Cloudy wing virus (CWV)
CWV ? pol(p) 414 AF034543 A.C.F. Hung, unpublished  
 
Homalodisca coagulata virus 1 (HoCV-1)
HoCV-1 ? CG 9321 DQ288865 Hunnicutt et al., 2006  
 
Blackberry virus Z (BVZ)
BVZ HCRL Glen Clova nsp (pol?) 862 DQ378058 Tzanetakis and Martin, unpub. host: raspberry cv. Glen Cova
 
Israel acute paralysis virus of bees (IAPV)
IAPV ? CG 9499 EF219380 Maori et al., unpublished  
IAPV ? ? 498 DQ490107 MaoriE and Sela, unpub. from DI particle
 
Acheta domesticus virus (ADV)
ADV USA (cricket) capsid 1580 DQ112164 Valles and Chen, 2006  
 
CG = complete genome; (p) = partial gene sequence; N/A = not available on the EMBL/GenBank/DDBJ databases

References

Bakonyi, T., Farkas, R., Szendroi, A., Dobos-Kovacs, M. and Rusvai, M. (2002a). Detection of acute bee paralysis virus by RT-PCR in honey bee and Varroa destructor field sampes: rapid screening of representative Hungarian apiaries. Apidologie 33: 000-000 (In press).

Bakonyi, T., Grabensteiner, E., Kolodziejek, J., Rusvai, M., Topolska, G., Ritter, W. and Nowotny, N. (2002b). Phylogenetic analysis of acute bee paralysis virus strains. Appl. Environ. Microbiol. 68: 6446-6450.

Chang, Y.S., Peng, S.E., Yu, H.T., Liu, F.C., Wang, C.H., Lo, C.F. and Kou, G.H. (2004). Genetic and phenotypic variations of isolates of shrimp Taura syndrome virus found in Penaeus monodon and Metapenaeus ensis in Taiwan. J. Gen. Virol. 85: 2963-2968.

Czibener, C., La Torre, J.L., Muscio, O.A., Ugalde, R.A. and Scodeller, E.A. (2000). Nucleotide sequence analysis of Triatoma virus shows that it is a member of a novel group of insect RNA viruses. J. gen. Virol. 81: 1149-1154.

De Miranda, J.R., Drebot, M., Tyler, S., Shen, M., Cameron, C.E., Stoltz, D.B. and Camazine, S.M. (2004). Complete nucleotide sequence of Kashmir bee virus and comparison with acute bee paralysis virus. J. Gen. Virol. 85: 2263-2270.

Ghosh, R.C., Willcocks, M.M., Ball, B.V. and Carter, M.J. (1999a). PCR amplification of black queen cell virus from the honey bee. Unpublished. [University of Surrey, Guildford, Surrey, GU2 5XH, UK]

Ghosh, R.C., Ball, B.V., Willcocks, M.M. and Carter M.J. (1999b). PCR of honeybee viruses. Unpublished. [University of Surrey, Guildford, Surrey, GU2 5XH, UK]

Govan, V.A., Leat, N., Allsopp, M. and Davison, S. (2000). The analysis of the complete genome sequence of acute bee paralysis virus shows that it belongs to the novel group of insect-infecting RNA viruses. Virology 277: 457-463.

Hung, A.C.F. unpublished data. [Bee Research Lab, USDA, Bldg. 476, BARC-East, Bowie, MD 20705, USA]

Hung, A.C.F. and Shimanuki, H. (a). Detection of latent Kashmir bee virus using direct RT-PCR. Unpublished.

Hung, A.C.F. and Shimanuki, H. (b). PCR detection of Kashmir bee virus in honey bee excretion. Unpublished.

Hung, A.C.F. and Shimanuki, H. (1999). A scientific note on the partial nucleotide sequence of a US strain of Kashmir bee virus isolated from Apis mellifera L. Apidologie 30: 355-356.

Hung, A.C.F., Peng, C.Y.S. and Shimanuki H. (a). Serological and molecular evidence for Kashmir bee virus transmission by the parasitic mite Varroa jacobsoni. Unpublished.

Hung, A.C.F., Peng, C.Y.S. and Shimanuki, H. (b). Kashmir bee virus: Its transmission and virulence. Unpublished.

Huang, X.X. and Lu, C.P. The molecular diagnosis and phylogenetic analysis of Taura syndrome virus isolated in China. Unpublished. [College of Veterinary Medicine, Nanjing Agriculture University, Tongwei Road, Nanjing, Jiangsu 210095, China]

Hunnicutt, L.E., Hunter, W.B., Cave, R.D., Powell, C.A., Mozoruk, J.J (2006). Genome sequence and molecular characterization of Homalodisca coagulata virus-1, a novel virus discovered in the glassy-winged sharpshooter (Hemiptera: Cicadellidae). Virology, Mar 28; [Epub ahead of print]

Johnson, K.N. and Christian, P.D. (1998). The novel genome organisation of the insect picorna-like virus Drosophila C virus suggests this virus belongs to a previously undescribed virus family. J. Gen. Virol. 79: 191-203.

King, L.A., Pullin, J.S.K., Stanway, G., Almond, J.W., Moore, N.F. (1987). Cloning of the genome of cricket paralysis virus: Sequence of the 3' end. Virus Res. 6: 331-344.

Leat, N., Ball, B., Govan, V. and Davison, S. (2000). Analysis of the complete genome sequence of black queen-cell virus, a picorna-like virus of honey bees. J. Gen. Virol. 81: 2111-2119.

Lien, T.-W., Hsiung, H.-C. and Song, Y.-L. Genomic similarities of Taura Syndrome Virus (TSV) between Taiwan and western hemisphere isolates. Unpublished. [Zoology, National Taiwan University, 1 Roosevelt Rd., Section 4, Taipei 106, Taiwan, ROC]

Maori, E., Lavi, S. and Sela, I. Characterization of the bee virus Israeli acute paralysis virus (IAPV) and defective RNAs thereof. Unpublished. [Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot 76100, Israel]

Maori, E. and Sela, I. Israeli acute paralysis virus sequence containing a segment of host genome. Unpublished.

Mari, J., Lightner, D.V., Poulos, B.T. and Bonami, J.-R. Full nucleotide sequence and genome organization of the Taura syndrome virus of Penaeid shrimp. Unpublished. [UMR 5098, CNRS/IFREMER/UM2, Place E. Bataillon, Montpellier 34095, France]

Mari, J., Poulos, B.T., Lightner, D.V. and Bonami, J.-R. (2002). Shrimp Taura syndrome virus: genomic characterization and similarity with members of the genus Cricket paralysis-like viruses. J. Gen. Virol. 83: 915-926.

Moon, J.S., Domier, L.L., McCoppin, N.K., D'Arcy, C.J. and Jin, H. (1998). Nucleotide sequence analysis shows that Rhopalosiphum padi virus is a member of a novel group of insect-infecting RNA virus. Virology 243: 54-65.

Nakashima, N., Sasaki, J. and Toriyama, S. (1999). Determining the nucleotide sequence and capsid-coding region of Himetobi P virus: a member of a novel group of RNA viruses that infect insects. Archives of Virology 144: 2051-2058.

Nakashima, N., Kawahara, N., Omura, T. and Noda, H. (2006). Characterization of a novel satellite virus and a strain of Himetobi P virus (Dicistroviridae) from the brown planthopper, Nilaparvata lugens. J. Insect Physiol. 91: 53-56.

Navarro, S.A., Tang, K.F.J. and Lightner, D.V. Unpublished. [Veterinary Science and Microbiology, University of Arizona, 1117 E. Lowell, Tucson, AZ 85721, USA]

Ribiere, M., Schurr, F. and Lallemand, P. (a). RT-PCR ABPV detection. Unpublished. [Unite Abeille, AFSSA, 105 route des Chappes, Sophia-Antipolis 06902, France]

Ribiere, M., Lallemand, P. and Schurr F. (b). PCR detection of Black queen cell virus from the honey bee in French apiaries. Unpublished. [Unite Abeille, AFSSA, 105 route des Chappes, Sophia Antipolis F-06902, France]

Robles-Sikisaka, R., Garcia, D.K., Klimpel, K.R. and Dhar, A.K. (2001). Nucleotide sequence of 3'-end of the genome of Taura syndrome virus of shrimp suggests that it is related to insect picornaviruses. Arch. Virol. 146: 941-952.

Sasaki, J., Nakashima, N., Saito, H. and Noda, H. (1998). An insect picorna-like virus, Plautia stali intestine virus, has genes of capsid proteins in the 3' part of the genome. Virology 244: 50-58.

Srisuvan, T., Tang, K.F. and Lightner, D.V. (2005). Experimental infection of Penaeus monodon with Taura syndrome virus (TSV). Dis. Aquat. Org. 67: 1-8.

Tang, K.F. and Lightner, D.V. (2005). Phylogenetic analysis of Taura syndrome virus isolates collected between 1993 and 2004 and virulence comparison between two isolates representing different genetic variants. Virus Res. 112: 69-76.

Tzanetakis, I.E. and Martin, R.R. Blackberry virus Z: a new picorna-like virus infecting Rubus sp. Unpublished. [Botany and Plant Pathology, Oregon State University and USDA-ARS, 3420 Orchard Ave, Corvallis, OR 97330, USA]

Valles, S.M. and Strong, C.A. (2005). Solenopsis invicta virus-1A (SINV-1A): Distinct species or genotype of SINV-1?  J. Invertebr. Pathol. 88: 232-237.

Valles, S.M. and Chen, Y. (2006). Serendipitous discovery of an RNA virus from the cricket Acheta domesticus. Fla. Entomol. 89: 282-283.

Valles, S.M., Strong, C.A., Dang, P.M., Hunter, W.B., Pereira, R.M., Oi, D.H., Shapiro, A.M. and Williams, D.F. (2004). A picorna-like virus from the red imported fire ant, Solenopsis invicta: initial discovery, genome sequence, and characterization. Virology 328: 151-157.

Van Munster, M., Dullemans, A.M., Verbeek, M., Van Den Heuvel, J.F., Clerivet, A. and Van Der Wilk, F. (2002). Sequence analysis and genomic organization of aphid lethal paralysis virus: a new member of the family Dicistroviridae. J. Gen. Virol. 83: 3131-3138.

Wilson, J.E., Powell, M.J., Hoover, S.E. and Sarnow P. (2000). Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites. Mol. Cell. Biol. 20: 4990-4999.

Wu, C.-Y., Lo, C.-F., Huang, C.-J., Yu, H.-T. and Wang, C.-H. Nucleotide sequence analysis and genomic organization of Perina nuda picorna-like virus, PnPV. Unpublished. [Department of Entomology, National Taiwan University, 1, Sec. 4, Roosevelt Rd., Taipei 106, Taiwan]

 
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